Search for Arabidopsis miRNA Candidates

Target:      Result Limit miRNA:      5' U present      percent GC to Precursor:          rice homologues          nMFE kcal/mol/nt to Target-miRNA:      MFE threshold kcal/mol Overide above parameters Show All Results Results as RNADNA Enter a Transcript ID Intergenic or Intron ID DNA/RNA sequence Rfam precursor name ( examples ): Extra Limits: Sequence queries miRNA candidate and query overlap > 15 nt Transcript queries Overlapping target sites If you use our data and/or software in your research, please cite this web resource, and our paper. Computational Prediction of miRNAs in Arabidopsis thaliana. Alex Adai, Cameron Johnson, Sizolwenkosi Mlotshwa, Sarah Archer-Evans, Varun Manocha, Vicki Vance, and Venkatesan Sundaresan. Genome Research 15:78-91, 2005 Addendum - Identification of miR395 targets by findMiRNA. Contact :- We would be very interested to know of any new miRNAs found using this resource. To provide suggestions and feedback please contact Venkatesan Sundaresan at [ sundar at ucdavis dot edu ].